Published work

IGF2BPs directly regulate the noncanonical translation of toxic proteins from mutant FMR1 mRNA containing expanded CGG repeats.

Baud A, Saha D, Skrzypczak T, Broniarek I, Niewiadomska D, Szlachcic WJ, Borowiak M, Gudipati RK, Sobczak K.

Nature Communications, 2025 Dec 10. doi: 10.1038/s41467-025-67261-y.​

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The Caenorhabditis elegans DPF‐3 and human DPP4 have tripeptidyl peptidase activity. 

Trivedi, A., & Gudipati, R. K.

FEBS Letters, 2025 Nov 14. doi: 10.1002/1873-3468.70219.

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Dipeptidyl peptidase DPF-3 is a gatekeeper of microRNA Argonaute compensation in animals.

Louis-Mathieu H, Pierre-Marc, Gudipati RK, Michaud P, Houle F, Young D, Desbiens C, Ladouceur S, Dufour A, Großhans H, Simard MJ.

Nature Communications, 2025 Mar 20;16(1):2738.​​

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Deep quantification of substrate turnover defines protease subsite cooperativity.

Gudipati, R. K., Gaidatzis, D., Seebacher, J., Muehlhaeusser, S., Kempf, G., Cavadini, S., ... & Großhans, H. (2024).

Molecular Systems Biology. 2024 Dec;20(12):1303-1328.

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Protease-mediated processing of Argonaute proteins controls small RNA association.

Gudipati RK*, Braun K, Gypas F, Hess D, Schreier J, Carl S, Ketting RF and Großhans H*.

Mol. Cell. 2021 Jun 3;81(11):2388-2402.

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Extensive degradation of RNA precursors by the exosome in wild type cells.

Gudipati RK, Xu Z, Lebreton A, Séraphin B, Steinmetz LM, Jacquier A and Libri D.

Mol. Cell. 2012 Nov 9;48(3):409-21.

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The yeast RPL9B gene is regulated by modulation between two modes of transcription termination.

Gudipati RK, Neil H, Feurbach F, Malabat C and Jacquier A.

EMBO J. 2012 May 16;31(10):2427-37.

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Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice.

Gudipati RK, Villa T, Boulay J, Libri D.

Nat Struct Mol Biol. 2008 Aug;15(8):786-94.

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In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1 dependent transcription termination.

Porrua-Fuerte O, Hobor F, Boulay J, Kubicek K, D’Aubenton-Carafa1Y, Gudipati RK, Stefl R and Libri D.

EMBO J. 2012 Oct 3;31(19):3935-48.

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CodY activates the transcription of a small RNA in Bacillus subtilis.

Preis H, Eckart RA, Gudipati RK, Heidrich N, Brantl S.

J Bacteriol. 2009 Sep;191(17):5446-57.

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THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

Rougemaille M, Dieppois G, Kisseleva-Romanova E, Gudipati RK, Lemoine S, Blugeon C, Boulay J, Jensen TH, Stutz F, Devaux F, Libri D.

Cell. 2008 Oct 17;135(2):308-21.

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mRNA journey to the cytoplasm: attire required. (Review)
Rougemaille M, Villa T, Gudipati RK and Libri D.

Biol Cell. 2008 Jun;100(6):327-42.

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Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants.

Rougemaille M, Gudipati RK, Raabjerg- Olesen J, Thomsen R, Seraphin B, Libri D, Jensen TH

EMBO J. 2007 May 2;26(9):2317-26.